Genome Mappability Track Settings

Genome Mappability (All ChIP Seq Tracks)

Display mode: Reset to defaults

Type of graph:
Track height:	pixels (range: 11 to 110)
Data view scaling:	Always include zero:
Vertical viewing range:	min:	max: (range: 0 to 100)
Transform function:	Transform data points by:
Windowing function:		Smoothing window:	pixels
Negate values:
Draw y indicator lines:	at y = 0.0: at y =

Graph configuration help

List subtracks: only selected/visible all
	hide Configure	50bp SE Reads (10x)	ART 50bp Single-end Reads with 10x coverage	Schema
	hide Configure	36bp PE Reads (10x)	ART 36bp Paired-end Reads with 10x coverage	Schema

Description

Simulated Illumina reads were produced by the ART read simulator using the D. melanogaster genome assembly. These simulated reads are then mapped against the D. melanogaster genome assembly using bwa with the aln algorithm.

The reads for the 50bp SE Reads (10x) track were produced using the following parameters:


--fcov 10 --noALN --rndSeed 4135 --seqSys GA2 --len 50

References

Huang W, Li L, Myers JR, Marth GT. ART: a next-generation sequencing read simulator. Bioinformatics. 2012 Feb 15;28(4):593-4.

Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 2010 Mar 1;26(5):589-95.