Pausing Factors ChIP-chip (S2 Cells) Track Settings
 
Pausing Factors ChIP-chip in S2 Cells   (All ChIP-chip Tracks)

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 Configure 		 DSIF Chers  DSIF ChIP-enriched Regions Identified by Ringo   Schema 
 
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 Configure 		 TFIIA Chers  TFIIA ChIP-enriched Regions Identified by Ringo   Schema 
 
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 Configure 		 TFIIA Enrichment  Smoothed TFIIA Probe Intensities (800bp Window)   Schema 
    

Description

These tracks show the ChIP-chip enrichment profiles for DRB Sensitivity Inducing Factor (DSIF), Negative Elongation Factor (NELF), and Transcription Factor II A (TFIIA). The NimbleGen ChIP-chip datasets were obtained from the NCBI Gene Expression Omnibus database under the accession number GSE20471, and then analyzed using the Ringo package in Bioconductor.

References

Gilchrist DA, Dos Santos G, Fargo DC, Xie B, Gao Y, Li L, Adelman K. Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation. Cell. 2010 Nov 12;143(4):540-51.

Toedling J, Huber W. Analyzing ChIP-chip data using bioconductor. PLoS Comput Biol. 2008 Nov;4(11):e1000227.