GAF KD Differential Regions Track Settings

GAF vs. GAF_KD Differential Regions (All ChIP Seq Tracks)

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	hide	GAF Unique	Unique Binding Sites in GAF Sample	Schema
	hide	GAF-KD Unique	Unique Binding Sites in GAF-KD Sample	Schema
	hide	Common Peaks	Common Peaks in GAF and GAF-KD Samples	Schema

Description

These tracks show the differential enrichment regions between the GAF and GAF-KD samples as identified by the bdgdiff program in MACS2.

The ChIP-Seq dataset was obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE40646

Credits

Fuda NJ, Guertin MJ, Sharma S, Danko CG, Martins AL, Siepel A, Lis JT. GAGA factor maintains nucleosome-free regions and has a role in RNA polymerase II recruitment to promoters. PLoS Genet. 2015 Mar 27;11(3):e1005108.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.