ORGANIC Enrichment (S2 Cells) Track Settings
 
ORGANIC Enrichment Profiles for S2 Cells (R5)   (All ChIP Seq Tracks)

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 GAF Peaks  ORGANIC Peaks for GAF   Schema 
 
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 Configure 		 GAF ORGANIC (len25) (Rep 1)  ORGANIC GAF len25 Profiles (Replicate 1)   Schema 
 
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 Configure 		 GAF ORGANIC (len25) (Rep 2)  ORGANIC GAF len25 Profiles (Replicate 2)   Schema 
 
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 Psq Peaks  ORGANIC Peaks for Psq   Schema 
 
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 Configure 		 Psq ORGANIC (len25) (Rep 1)  ORGANIC Psq len25 Profiles (Replicate 1)   Schema 
 
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 Configure 		 Psq ORGANIC (len25) (Rep 2)  ORGANIC Psq len25 Profiles (Replicate 2)   Schema 
    

Description

These tracks show the regions that are enriched in GAGA Factor (GAF) and Pipsqueak (Psq) in Drosophila S2 cells based on the Occupied Regions Genomes from Affinity-purified Naturally Isolated Chromatin (ORGANIC) profiles. Only reads with an estimated fragment length of 50 bp or less (len25) were used to create the read coverage tracks.

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE45672. The peak calls for GAF and Psq were obtained from Supplemental File 1 of the manuscript by Kasinathan S and colleagues.

Credits

Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nat Methods. 2014 Feb;11(2):203-9.