Schulz FAIRE-Seq Track Settings

FAIRE-Seq of Drosophila Embryos (Schulz et al. 2015) (All Expression and Regulation tracks)

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	hide Configure	FAIRE Peaks (yw)	FAIRE Peaks (yw Embryos)	Schema
	hide Configure	FAIRE logLR (yw)	FAIRE Log Likelihood Enrichment (yw Embryos)	Schema
	hide Configure	FAIRE Peaks (zldM-)	FAIRE Peaks (zldM- Embryos)	Schema
	hide Configure	FAIRE logLR (zldM-)	FAIRE Log Likelihood Enrichment (zldM- Embryos)	Schema

Description

These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of 2-3 hour Drosophila embryos lacking maternal Zelda (zldM-) and of control embryos (yw). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2.

The datasets were obtained from the NCBI BioProject database under the accession number PRJNA275186.

Credits

Schulz KN, Bondra ER, Moshe A, Villalta JE, Lieb JD, Kaplan T, McKay DJ, Harrison MM. Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo. Genome Res. 2015 Nov;25(11):1715-26.

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.