modENCODE RNA-Seq from Adult Males (adultmales_rnaseqcov)
  Position: CM002916:270,000-273,000
Total Bases in view: 3,001
Statistics on: 1,475 items covering 2,577 bases (85.87% coverage)
Average item spans 1.75 bases. Minimum span 1 maximum span 59
Average value 571.202 min 1 max 1107 standard deviation 306.277
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Data last updated at UCSC: 2017-09-06 19:45:49


This track was created by mapping D. simulans RNA-Seq reads (generated by the modENCODE project) against the D. simulans DsimGB2 assembly using HISAT2. The RNA-Seq read coverage tracks were produced by the genomecov subprogram in bedtools. The RNA-Seq data were obtained from the NCBI Sequence Read Archive under the accession number SRP006203.


Chen ZX et al. Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Res. 2014 Jul;24(7):1209-23.

Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements Nat Methods. 2015 Apr;12(4):357-60.

Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.