ChIP-Seq MBT Embryos Track Settings
 
ChIP-Seq of Embryos Under Midblastula Transition   (All ChIP Seq Tracks)

Maximum display mode:       Reset to defaults   
Select views (Help):
Peaks ▾       Log Likelihood ▾      
 
Peaks Configuration
Score range: min: (0 to 1000)
Select subtracks by marktype and replicates:
 All MarkType Histones modifications  Chromosomal proteins 
Replicates
Replicate 1 
Replicate 2 
Replicate 3 
Select subtracks further by: (select multiple items - help)

List subtracks: only selected/visible    all    ()  
 
hide
 Configure 		 H3Ac (Rep 1) Peaks  H3Ac Peaks for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 H3Ac (Rep 1) logLR  H3Ac Log Likelihood Enrichment for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 H3Ac (Rep 2) Peaks  H3Ac Peaks for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 H3Ac (Rep 2) logLR  H3Ac Log Likelihood Enrichment for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 H3K4me3 (Rep 1) Peaks  H3K4me3 Peaks for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 H3K4me3 (Rep 1) logLR  H3K4me3 Log Likelihood Enrichment for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 H3K4me3 (Rep 2) Peaks  H3K4me3 Peaks for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 H3K4me3 (Rep 2) logLR  H3K4me3 Log Likelihood Enrichment for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 H3K27me3 (Rep 1) Peaks  H3K27me3 Peaks for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 H3K27me3 (Rep 1) logLR  H3K27me3 Log Likelihood Enrichment for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 PolII (Rep 1) Peaks  PolII Peaks for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 PolII (Rep 1) logLR  PolII Log Likelihood Enrichment for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 PolII (Rep 2) Peaks  PolII Peaks for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 PolII (Rep 2) logLR  PolII Log Likelihood Enrichment for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 PolII (Rep 3) Peaks  PolII Peaks for MBT Embryos (Replicate 3)   Schema 
 
hide
 Configure 		 PolII (Rep 3) logLR  PolII Log Likelihood Enrichment for MBT Embryos (Replicate 3)   Schema 
 
hide
 Configure 		 TBP (Rep 1) Peaks  TBP Peaks for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 TBP (Rep 1) logLR  TBP Log Likelihood Enrichment for MBT Embryos (Replicate 1)   Schema 
 
hide
 Configure 		 TBP (Rep 2) Peaks  TBP Peaks for MBT Embryos (Replicate 2)   Schema 
 
hide
 Configure 		 TBP (Rep 2) logLR  TBP Log Likelihood Enrichment for MBT Embryos (Replicate 2)   Schema 
    

Description

These tracks show the results of the ChIP-Seq analyses of histone modifications, RNA Polymerase II, and TATA-binding protein (TBP) for Drosophila embryos during the midblastula transition (MBT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS.

Credits

The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE41700.

Chen K, Johnston J, Shao W, Meier S, Staber C, Zeitlinger J. A global change in RNA polymerase II pausing during the Drosophila midblastula transition. Elife. 2013 Aug 13;2:e00861.